| A | Alewives | CHS | Chinook Salmon | LMB | Largemouth Bass | SKH | Snakehead |
| AE | American Eel | COS | Coho Salmon | LT | Lake Trout | SMB | Smallmouth Bass |
| BF | Bowfin | CP | Chain Pickerel | LW | Lake Whitefish | SPL | Splake |
| BK | Banded Killfish | CRA | Crappie | M | Muskellunge | ST | Steelhead |
| BLB | Black Bullhead | D | Dace | NP | Northern Pike | TM | Tiger Musky |
| BNB | Brown Bullhead | FD | Freshwater Drum/Sheepshead | RB | Rock Bass | W | Walleye |
| BNT | Brown Trout | FF | Fallfish | RP | Redfin Pickerel | WP | White Perch |
| BRK | Brook Trout | GRP | Grass Pickerel | RS | Rainbow Smelt | WS | White Sucker |
| CA | Carp | GZS | Gizzard Shad | RT | Rainbow Trout | YB | Yellow Bullhead |
| CC | Channel Catfish | LG | Longnose Gar | S | Sunfish | YP | Yellow Perch |
| CHB | Chub | LLS | Landlocked Salmon | SH | Shiners |
| LAKE/POND | LOCATION | SPECIES | SPECIAL NOTES |
|---|---|---|---|
| Afton Lake | Afton | ||
| Agfa Lake | Windsor | ||
| Alder Bed Pond | Redfield | ||
| Alexander Pond/Lake | Newark Valley | S YP | |
| Aquetterra Pond | Binghamton | S YP | |
| Arctic Lake | Sanford | RT LMB YP S WS BNB | |
| Ashcraft Pond | German | ||
| Auburn Reservoir | Sennett | ||
| Bainbridge Reservoir | Guilford | ||
| Baker Reservoir | Oneida | ||
| Balsam Pond | McDonough/Pharsalia | LMB SMB CP YP CRA S BNB | |
| Bass Lake | Williamstown | ||
| Beaver Lake | Windsor | ||
| Beaver Pond | Lapeer | ||
| Beaver Pond | Newfield | ||
| Beaver Pond | Sanford | ||
| Beebe Lake | Cayuga Heights | ||
| Black Pond | Williamstown | ||
| Bliven Pond | McDonough | ||
| Bloody Pond | Willet | ||
| Blueberry Lake | Sanford | ||
| Borden Pond | Greene | ||
| Bosket Lake | Union | ||
| Bowman Lake | Mcdonough | RT BRK LMB CRA S BNB | |
| Brackett Lake | Oxford | ||
| Bradley Brook Reservoir | Eaton | CP S RB NP YP BNB CA | |
| Brandywine Res. (Whitman Dam) | Dickinson | ||
| Bud Lee Pond | Albion | ||
| Calico Pond (Lieb Pond) | Cincinnatus | LMB CP CRA YP BNB | |
| Campbell Lakes | Smithfield | ||
| Canastota Reservoir | Lincoln | WS BNB S YP | |
| Carpenter Pond | Pompey | ||
| Carterville Pond | Williamstown | ||
| Casterline Pond | Homer | LMB BNT RT BNB S YP | |
| Castor Pond | Redfield | ||
| Cayuga Lake | Cayuga County/Tompkins County | CP NP S YP RT BNT LT LLS SMB LMB CRA CA CC BNB LG | |
| Cazenovia Lake | Cazenovia | CRA LMB RB YP S SMB W SH WS YB BNB BK | |
| Cement Pond | Elbridge | ||
| Chase Pond | Amboy | ||
| Chenango Lake | New Berlin | TM LMB SMB CP YP S RB BNB | |
| Chenango Lake | Fenton/Chenango Forks | RT LMB YP S | |
| Cincinnatus Lake | Willet | ||
| Clines Pond | Binghamton | ||
| Coan Pond | Amboy | ||
| Cody Pond | Constantia | ||
| Crooked Lake | Tully | ||
| Crooks Pond | Scriba | ||
| Cross Lake | Onondaga County/Cayuga County | W TM WP NP LMB YP CRA CC BNB LG GZS S CA SMB | |
| DeRuyter Reservoir | De Ruyter | W LMB CRA SMB YP WS CP RB S BNB | |
| Dean Pond | Marathon | ||
| Deer Lake | Windsor | ||
| Deer Pond | Pharsalia | ||
| Deer Pond | Redfield | ||
| Deposit Reservoir | Sanford | ||
| Dodge Pond | Barton | ||
| Dryden Lake | Dryden | S YP LMB CP BNB CRA CA | |
| Duck Lake | Conquest | TM CRA BNB YP CA S LMB NP | |
| Dutcher Pond | Constantia | ||
| Earlville Lake | Lebanon | ||
| Earlville Reservoir | Hamilton | ||
| East Syracuse Reservoir | Jamesville | ||
| Eaton Brook Reservoir | Nelson/Eaton | LMB SMB RT CP W YP S RB CRA BNB WS SH | |
| Echo Lake | Smithville Flats | ||
| Echo Lake | West Bainbridge | ||
| Edick Pond | Williamstown | ||
| Electric Light Pond | Eaton | ||
| Ellis Lake | Willet | ||
| Empire Lake | Spencer | ||
| Evergreen Lake | Manlius | ||
| Finch Hollow Site 1 | Johnson City | ||
| Fly Pond | Sanford | ||
| Francis Pond | Constantia | ||
| Fritz Pond | Parish | ||
| Gatehouse Pond | Tully | ||
| Genegantslet Lake | McDonough | ||
| Glimmerglass Lagoon | Oswego | ||
| Goodale Lake | Preble | CP S YP | |
| Goodfellows Pond | Palermo | ||
| Gorton Lake | Brookfield | ||
| Gowdy Pond | Orwell | ||
| Grays Millpond | Mexico | ||
| Green Lake | Preble | ||
| Green Lake | Tully | LMB SMB CP RB YP S WS BNB | |
| Green Lake (Clark Reservation S.P.) | Dewitt | W CP S SH | |
| Green Lake (Green Lake State Park) | Manlius | RT LMB S RB NP YP | |
| Greenwood Lake | Nanticoke | RT LMB CRA S YP | |
| Guilford Lake | Guilford | LMB SMB W CRA WP CP BNT BNB YP WS RB S RT | |
| Hatch Lake | Eaton | LMB NP S YP WS | |
| Hawkins Pond | Windsor | S YP | |
| Hiawatha Lake | Syracuse | ||
| Hill Top Lake | Spencer | ||
| Holden Pond | Owego | ||
| Hotel Pond | Amboy | ||
| Howland Island Wildlife Management Area Ponds | Conquest | S YP | |
| Hunt Pond | New Berlin | ||
| Hunts Pond | New Berlin | S CP YP | |
| Ike Allen Pond | Williamstown | ||
| Ithaca Reservoir | Ithaca | ||
| Jackson Pond | Binghamton | ||
| Jackson Pond | Pharsalia | S YP | |
| Jackson Pond | Orwell | ||
| Jam Pond | German | ||
| Jamesville Reservoir | Lafayette | W TM SMB LMB WP CRA WS YP BNB CP S | |
| Jeffrey Pond | North Norwich | BRK LMB BNB S SH | |
| Jennings Pond | Danby | CP S YP | |
| Juniper Pond | Sterling | ||
| Kasoag Lake | Williamstown | S YP | |
| Kibbie Lake | Constantia | ||
| Knapp Pond | Lincklaen | ||
| Labrador Pond | Tully | SMB CP S BNB YP | |
| Lake Como | Summerhill | TM W CP LMB CC RB YP WS BNB CRA S SMB | |
| Lake Diana | Candor | ||
| Lake Gerry | Oxford | ||
| Lake Loraine | Williamstown | ||
| Lake Ludlow | McDonough | ||
| Lake Neatahwanta | Granby | CA NP YP S | |
| Lake Ontario | Cayuga County/Oswego County | BNT RT LT CHS COS LLS SMB LMB W NP YP CRA RB WP BNB | |
| Lake Petonia | Greene | ||
| Lake Temalo | Schroeppel | ||
| Lake Treman | South Hill | ||
| Laurel Lake | Sanford | ||
| Lebanon Reservoir | Lebanon | LMB RT CRA YP S WS BNB W | |
| Lighthouse Hill Reservoir (Lower Salmon River Res.) | Altmar | RT LMB BNT YP RB BNB S | |
| Lily Lake | Fenton | ||
| Lily Pond | New Haven | ||
| Little Choconut 1 (Finch Hollow #1) | Union | RT | |
| Little Choconut 2 | Dickinson | ||
| Little Choconut 2A | Union | ||
| Little Choconut 2B | Maine | ||
| Little Choconut 2C | Maine | ||
| Little Choconut 2E | Chenango | RT LMB S BNB | |
| Little Coan Pond | Amboy | ||
| Little York Lake | Preble/Homer | LMB RB BNB S YP RT BNT CP CRA CA | |
| Long Pond | Smithville | LMB CRA YP CP S BNB TM | |
| Long Pond | Williamstown | S YP | |
| Lost Lake | Manlius | ||
| Lower Leland Pond | Eaton | LMB NP TM BNB BF CRA WP S YP CP BNT | |
| Lower Reservoir | Orwell | ||
| Lyons Pond | Madison | ||
| Madison Lake | Madison | ||
| Madison Pond | New Berlin | ||
| Madison Reservoir (Lake Moraine) | Madison | LMB SMB CP TM CRA S RB YP W | |
| Marsh Pond | Sanford | ||
| McCall Pond | Preston | ||
| McMullen Pond | Hannibal | ||
| Mead Pond | North Norwich | ||
| Mill Brook Reservoir | New Berlin | LMB RT BNB S BNT YP RB CRA | |
| Miller Lake | Smithfield | ||
| Monahan Pond | Binghamton | ||
| Moscript Pond | Freetown |
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